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Chapter 1:
Codon Usage Bias in
Phylogenetic Systematics:
A Review
Chapter 2:
Missing Something?
Codon aversion as a
new character state
in phylogenetics
Chapter 3:
Codon Use and Aversion
is Largely
Phylogenetically
Conserved Across
the Tree of Life
Chapter 4:
CAM:
An alignment-free method to
recover phylogenies
using codon aversion motifs
Chapter 5:
Codon Pairs are
Phylogenetically Conserved:
Codon pairing as a novel
phylogenetic character state
for parsimony and
alignment-free methods
Possible Chapter:
ExtRamp: A novel algorithm
for extracting the
ramp sequence based
on the tRNA adaptation index
or the codon adaptation index
JustOrthologs: A Fast, Accurate,
and User-Friendly Ortholog
Identification Algorithm
Other Publications